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SLiMSuite: Short Linear Motif discovery and molecular evolution toolkit

EdwardsLab Servers

Many of the EdwardsLab servers are currently under development. Please see the SLiMSuite Blog and REST server news page for more information and updates.

Servers

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EdwardsLab RShiny Servers

SLiMEnrich App

SLiMEnrich

The SLiMEnrich App assesses enrichment of domain-motif interactions in protein-protein interaction data. Please see the GitHub SLiMEnrich Wiki for details and documentation.

SLiMEnrich can be used to:

  • Estimate the enrichment of SLiM-mediated DMI in a given PPI dataset.
  • Identify known or predicted DMI in a PPI dataset based on known SLiM-mediated interactions.
  • Estimate the False Positive Rate of those DMI predictions.
  • With a bit of imagination, SLiMEnrich can be adapted to generate and assess predictions for other kinds of interactions. See docs for details.

    SLiMEnrich is available via the SLiMEnrich RShiny webserver and can be downloaded for local running from the SLiMEnrich GitHub repo.


    Other Shiny Apps

    Details coming soon.


    © 2017 RJ Edwards. Contact: richard.edwards@unsw.edu.au.