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SLiMSuite: Short Linear Motif discovery and molecular evolution toolkit
Web Apollo Genome Servers
Some of the Genome projects involving the Edwards Lab are available at our Web Apollo Genome server for browsing and annotation. User login may be required for unpublished genomes - please get in touch if you would like to gain access and/or be involved in genome annotation. Genomes available through these servers can be searched using the BLAST/Exonerate tool, below. A password may be required for searching genomes that are not marked as public.
The lab WebApollo servers are in the process of being updated, and more public genomes should be available soon. (Check out the landing page and available search genomes, below.)
Web Apollo Genome search tool
This server allows simple Exonerate or BLAST+ searches of DNA, CDS or protein sequences against one of our Web Apollo genomes. Select the genome to search and the Web Apollo instance to generate links for. Optionally, tracks to display can be listed under Advanced Options. Private genomes will need a
Note: some genomes may have multiple Web Apollo annotations. It is the genome status, not the Apollo status that determines password requirements. If no Web Apollo ID is selected, no links table will be generated - other search results will still be returned.
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