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Edwards |
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SLiMSuite: Short Linear Motif discovery and molecular evolution toolkit
EdwardsLab Servers
Many of the EdwardsLab servers are currently under development. Please see the SLiMSuite Blog and REST server news page for more information and updates.
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| Server Home | REST Servers | RShiny Servers | WebApollo Genomes | Bioware@UCD |
Web Apollo Genome Servers
Some of the Genome projects involving the Edwards Lab are available at our Web Apollo Genome server for browsing and annotation. User login may be required for unpublished genomes - please get in touch if you would like to gain access and/or be involved in genome annotation. Genomes available through these servers can be searched using the BLAST/Exonerate tool, below. A password may be required for searching genomes that are not marked as public.
Currently, public genome browsers are available for our two snake genome, sequenced as part of the BABS Genome Project, and the invasive cane toad, Rhinella marina:
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| Eastern Brown Snake v1.0 | Tiger Snake v1.0 | Cane Toad v2.2 |
The lab WebApollo servers are in the process of being updated, and more public genomes should be available soon. (Check out the landing page and available search genomes, below.)
Web Apollo Genome search tool
This server allows simple Exonerate or BLAST+ searches of DNA, CDS or protein sequences against one of our Web Apollo genomes. Select the genome to search and the Web Apollo instance to generate links for. Optionally, tracks to display can be listed under Advanced Options. Private genomes will need a password for access. This password will also be required to access the REST server results.
Note: some genomes may have multiple Web Apollo annotations. It is the genome status, not the Apollo status that determines password requirements. If no Web Apollo ID is selected, no links table will be generated - other search results will still be returned.
© 2018 RJ Edwards. Contact: richard.edwards@unsw.edu.au.