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SLiMSuite: Short Linear Motif discovery and molecular evolution toolkit

EdwardsLab Servers

Many of the EdwardsLab servers are currently under development. Please see the SLiMSuite Blog and REST server news page for more information and updates.

Servers

SLiMSuite-REST

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PeptCluster peptide sequence clustering

Enter sequences and click "Cluster". Sequences must be of same length (or be aligned) and can be raw sequences or fasta format. Sequences uploaded from a file will over-ride sequences in the textbox. (Example sequences are LIG_PCNA_PIPBox_1 ELM occurrences.)

PeptCluster options:

Method for generating pairwise peptide distances:
Clustering mode:
Alternative amino acid distance matrix:

Peptide Alignment

Align peptides: Will use as guide regular expression, else T/True for regex-free alignment or F/False for None.
Whether to identifies gaps in aligned peptides and generate variable length motif.
Whether peptides for alignment have termini (^ & $) or flanking X for regex match.
Maximum number of consecutive gaps to allow for peptide alignment without Regex guide:
Maximum total number of gaps to allow for peptide alignment without Regex guide:
Alternative peptide list upload:

In place of peptides, an ELM Class can also be entered into the box. See the REST aliases page for more details.

PeptCluster is available as part of the SLiMSuite package. For more information and citation details, please see the online PeptCluster documentation.

© 2016 RJ Edwards. Contact: richard.edwards@unsw.edu.au.