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SLiMProb: short linear motif prediction and probability of occurrence

This server is still in development. Please report any odd/unwanted behaviour.

SLiMProb Input Options:

Uniprot IDs (see alias list, e.g. LIG_Dynein_DLC8_1):

Alternative Uniprot ID list upload:

Alternative fasta file upload:

(NOTE: Uploaded files take precedence over entries in text box. Uploaded fasta file will supercede uniprot ID list.)

Motif Input

Motifs (Regular Expression or REST server alias) to search (see alias list, e.g. LIG_Dynein_DLC8_1):

Alternative Motif file upload (list of RegEx only):

Motif Filters

Max. occurrences:
Min. defined positions:
Min. fixed positions:
Min. normalised information content (1 fixed position = 1.0):

List of text to match in Motif names to keep (can have wildcards):

Masking Options

Disorder masking | Conservation masking.

Advanced Options

Other options:

Run

After running, click on the main tab to see overall summary of the SLiM predictions. If any SLiMS have been predicted, the occ tab will have details of which proteins (and where) they occur. Please see the REST tab of the SLiMProb documentation for a full list of results output tabs.


© 2017 RJ Edwards. Contact: richard.edwards@unsw.edu.au.